PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1458_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 758aa    MW: 86007.1 Da    PI: 7.2737
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1458_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12e-054174541355
                 HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 R++ N++f+ Lr ++P+ +       ++K +iL  +++Y+++L+
  RrC1458_p1 417 RSKENEKFSVLRAMVPTvN------EVDKESILNNTIKYLQELE 454
                 6677*************65......8***************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.4E-3624264IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.664404453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-8410459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.33E-5417458No hitNo description
Gene3DG3DSA:4.10.280.101.1E-8417464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-8417468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF495621.71E-10589701IPR000008C2 domain
PfamPF001688.3E-7590668IPR000008C2 domain
Gene3DG3DSA:2.60.40.1504.0E-8591702IPR000008C2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MPLTIMADGV EAARGGSKRK NSLLRKQLAV ALRSVQWSYA IFWSSSPTQS GVLEWEEGCY  60
NGDIKKRKKR YEAAHYKYAL QRSNQLRKLY LCMLEGDSNT TISTTHDVND HGDDEEHNCN  120
GTTSMMLSPD DLSDEECLPG RSLATGETIW LCNAQFADNK LFSRSLLARA SLLQPFHFFL  180
LNLDLLKNSL NFSFLSTCLA LHDCSYGFFS LECINSVRTK VECMSYIYVG LLQTVVCFPY  240
LGGVIELGVT ELISEDHSLL QHIKFCLLET SKPDCGSINF SGHQDSDDEK NQMKIKISDG  300
NSNSLLQENH QIQFGISDED VHYKRTVSTL LKYAADKDVH HLQPDQGSSN TGSSFLRWKQ  360
REQPNSILLQ EQSNLQPSSQ NVLRKILQDV PFMPSLDTKR MPPSKMFGLN QDDPWDRSKE  420
NEKFSVLRAM VPTVNEVDKE SILNNTIKYL QELEGRVEEL ESCMGSVNFV ERQRKSVNDS  480
VLIEETSGNY DDSTKIDGNS GETQKVTIMR DETHLRVKLK ETEVVMEVRC SYRDYIVADI  540
METLSKLHMD AFSVRSHTLN GFLTLNLKAK FRGAAVASVG MIKRELRRII GSPVYYVFLQ  600
CGTKEYRSKM SKGDNDNALW NQKFVFDFPM SQWKKLTHIK VRIMDKGLFK DGGFVGETIV  660
HLGGIITEGR DKGYIEVKPA PYNVVLEDGT FKGGLKLGFR FTATDKFHIK KAWEVKIEGK  720
NSEEPMVSPV LNMLKLPLLR HYRFTAAWSR VQAGPINA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16468KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936640.0AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480.
GenBankAF2516970.0AF251697.1 Arabidopsis thaliana putative transcription factor BHLH12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013684296.10.0PREDICTED: transcription factor MYC1-like
SwissprotQ8W2F10.0BH012_ARATH; Transcription factor MYC1
TrEMBLM4F8D10.0M4F8D1_BRARP; Uncharacterized protein
STRINGBra037343.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.11e-176bHLH family protein